Scaffold Ga0102820_1031784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0102820_1031784

Scaffold Ga0102820_1031784

Overview

Basic Information
Taxon OID	3300007554 Open in IMG/M
Scaffold ID	Ga0102820_1031784 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1294
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2	Long. (^o)	-123.94	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058153	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102820_10317842	F058153	GGAG	MATFDFYEILINHPTWEENYHDITDPDIRREIMRDVEDVSSEIAPTAMQQTGSEIEWVDLIFNDDVDPAVVVAKTRELLWNYSENMIIDLIESEAAKHAESYDA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.