NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102915_1025001

Scaffold Ga0102915_1025001


Overview

Basic Information
Taxon OID3300007562 Open in IMG/M
Scaffold IDGa0102915_1025001 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1561A-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1982
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2637Long. (o)-123.4651Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F067472Metagenome / Metatranscriptome125Y
F088902Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0102915_10250012F088902N/AMPHIPIPPKPTMTTQQILQKIQQINAGNIYNTPVTQPILDAQQIADIAIEQAKKVFQEYVKQEQEKKKTILTIENIDKIIGQDYSDSLKVGGVKEWDTHYEFTLLYASDNQIETILLHRRQTSDKRYIMEYKGQTLWVSKDRLSTIAGIIECMIEV*
Ga0102915_10250015F009960N/AVVNYIVSVIKTNNMLTLENIQKIDGYSLEVKGKGYYFKGWDNTTNDVTIFALAGVSASNPLIRITLYKKGNMVFDEIQNRDCYVYGIWVDGLLFHYTKERLNTPSEFRNTIEQILNAI*
Ga0102915_10250016F067472N/AMLTIDNIQNIEGREFQLNSGQKYVIGIVRAWHDNYSFGVFPLAVNGVAIIKDSIFYKLYRTKKSRRGYKLVTPKMKWQPYVKPENLTLDNFVLELHIQTGLLNAYNSK*
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