NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102915_1193484

Scaffold Ga0102915_1193484


Overview

Basic Information
Taxon OID3300007562 Open in IMG/M
Scaffold IDGa0102915_1193484 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1561A-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)661
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2637Long. (o)-123.4651Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102628Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0102915_11934841F102628N/AMHLALWTPPHTQRVIGGGHVLISGAPGAGKSHLLREAIVPGLVASGAQVLVIDYADVIGAKIKGLRREVYGEETFGISSPNAASPAANLLGSSAIATLASERAGRDAMADLLLRSLYVELIKNPPDRSARRFLVVDISHQSSALSTFGPLLREAVKNGFVLIVT
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