NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102921_1100261

Scaffold Ga0102921_1100261


Overview

Basic Information
Taxon OID3300007603 Open in IMG/M
Scaffold IDGa0102921_1100261 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1568-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2861Long. (o)-123.7318Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026552Metagenome197N
F049442Metagenome146N
F076079Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0102921_11002611F049442N/AMNKENLEQGLTKLLKTFYSKKYDRDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNDFDGLPIQKLYNLARELFGNIIGNSNWV
Ga0102921_11002612F026552N/AMELTNVIEKLLNRDSFLNLLENDIIEKFEVSVSPFESKILVIKMFLNTTTDEFTGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAHIIPNRILKPLVGKDYFIKILLFVVDKNGIHLFTEN*
Ga0102921_11002613F076079N/AMKYLITESQKENIIKKYILSNFDRVDDVWFITRSVYYGSGSVNGKDRGEEIIINILVDNSSREDSLTNSELRELKNTIINKTDKTFNLGYNRYGGGWGFSFSQKIIDKF*
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