Scaffold Ga0102945

Basic Information
Taxon OID	3300007609 Open in IMG/M
Scaffold ID	Ga0102945_1000144 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22567
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (31.43%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

22567

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (31.43%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

South San Francisco, USA

Coordinates

Lat. (^o)

37.4958

Long. (^o)

-122.1331

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008239	Metagenome / Metatranscriptome	336	Y
F030253	Metagenome	186	Y
F030897	Metagenome / Metatranscriptome	184	N
F044500	Metagenome	154	N
F046025	Metagenome / Metatranscriptome	152	N
F046651	Metagenome / Metatranscriptome	151	N
F056919	Metagenome / Metatranscriptome	137	N
F100722	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102945_100014410	F046025	AGTAG	MKVLFNQNISGADFYYLAGQVVELPAATAQEFLNANFCEVVEEKKEAKAERAVSNKTTKRTTRKAK*
Ga0102945_100014415	F046651	GAG	MKITLTKKVTLPSGKKLAKGLTLSVVNEYGRELIEAGKAVEFGVEAPAIIEEQINKLD*
Ga0102945_100014423	F044500	AGGAG	MNRLKEKAQEIKAELTLRFDSLRKIWQYSDSQPTEITLAAALVILYPTATYLELGYSPLMQVLAPIAGLYQLYCVSGKCLSCRVRASWVTFSFYLLAAVMYLYCGLLFKGPSYWGWVLLTISSFGSLKRIKKEELHRTNG*
Ga0102945_100014424	F100722	AGGA	MDNNTQIIIAVVTLLGSAGIWKYAEARLRVKAELRKEEQSTNDTVLYRDDLKNRVEEMDKALKEAHKELLELTQKVAKLETENSFLRREIDILKRN*
Ga0102945_100014426	F030897	N/A	MQLEAGTLILKVSGIEVEVPVVWDLVQGGPLYAMKDGQIFLSLTAEELKALYVIYRDLELKGTVEDA*
Ga0102945_100014432	F030253	N/A	MKKSIQKYLRKKKHIKYVDLYLSDTRWEIVNTVIAASSTEYNYAVQRHLDNLGQLVRKYERRRRWLKF*
Ga0102945_100014434	F008239	N/A	MREILLDMYEKLWNADKDKWAWNVILKDTLEKLETKDDTER*
Ga0102945_10001445	F056919	N/A	MKIKRVIQYAGAEILETQPGSFTALPNTPSFYGSRKFNSLAKAKFYLKQWNKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102945_1000144

Overview

Ecosystem & Geography

Associated Families

Sequences