Scaffold Ga0102801_1013565

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102801_1013565

Scaffold Ga0102801_1013565

Overview

Basic Information
Taxon OID	3300007612 Open in IMG/M
Scaffold ID	Ga0102801_1013565 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_A metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	927
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017306	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102801_10135651	F017306	GAGG	MSSMMDNLHLSQRVGPSDYGCDPYQVVVSTPNGELVHEYCLYSSAYGGPVRPDPVTGLRAEPTGGGRATVKWEWSENSFDLASPGAYFARDVIVEEGRLAWDGKVRKRPKTKPVAPAPKVEIIATLRAADVAVKSEWRQNCCDDEWEIHVSHAPTGSRLVWKGTSTAEHQDVKILRHAEAEGMVRIDFVYYCGENGSNSASDRSLFVKLGAKGIEWVPKHVCSGRLYDGPCSGTL*

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