NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102947_1301103

Scaffold Ga0102947_1301103


Overview

Basic Information
Taxon OID3300007619 Open in IMG/M
Scaffold IDGa0102947_1301103 Open in IMG/M
Source Dataset NameSoil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4962Long. (o)-122.1329Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001366Metagenome / Metatranscriptome713Y

Sequences

Protein IDFamilyRBSSequence
Ga0102947_13011032F001366N/ARTDDYLYLPVGVTTRTRVASRALSVTLEYDYLIHGWQKTRQSELGGGMVPATPTAPAFTIDGFTDVSFDQASGWALRASAEYQVNRRWSVEPYYVRWSVDDSTVNTITATFTVNGVAANQQLGFYEPRNTTDEFGVKLGFRF*
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