Scaffold Ga0102948_1196269

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102948_1196269

Scaffold Ga0102948_1196269

Overview

Basic Information
Taxon OID	3300007623 Open in IMG/M
Scaffold ID	Ga0102948_1196269 Open in IMG/M
Source Dataset Name	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	614
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4962	Long. (^o)	-122.1329	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013594	Metagenome / Metatranscriptome	270	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102948_11962691	F013594	N/A	PVRIRFEDGDSDGLAEFFDGSETGADGILVPRFSTTERNALATADVFAGLIIYNETDSKMQVYTGTDNTNNSGDWTDIGGGRIISDADGNTNIEIGATTTDEIDVDIAGLKVATFDAVGIGIETDGVGFSNSNTIAATATIPSDRNVGLFGTLAFTGVVTIEGQLDVL*

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