NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102901_1114112

Scaffold Ga0102901_1114112


Overview

Basic Information
Taxon OID3300007634 Open in IMG/M
Scaffold IDGa0102901_1114112 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1555A-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)770
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2024Long. (o)-123.9409Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006506Metagenome / Metatranscriptome371Y

Sequences

Protein IDFamilyRBSSequence
Ga0102901_11141122F006506AGGMKQLLIVCALVALSGCASIMEKIPSRWDAKQARVITHIQVQVKHFDCRGDQTQQLGSLALNIEWFDIYAKTKPTKDISKLTGTVTATVKEYQDRLKAGPVSPLYCDLKVKIIKQQTDILAGSVQGRF*
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