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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007636 Open in IMG/M |
| Scaffold ID | Ga0102856_1000928 Open in IMG/M |
| Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3468 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.2342 | Long. (o) | -123.9167 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002398 | Metagenome / Metatranscriptome | 563 | Y |
| F019834 | Metagenome | 227 | N |
| F021296 | Metagenome / Metatranscriptome | 219 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102856_10009281 | F021296 | AGGA | MSDTRTSFLELDDAPVKIQPNTSVFSNAGGFQVAEGSTAKQDANGNWVNAIGLQSTASHRHVSKVWQNKCTPLADFVNVVKGEAPNKKDITKKESEIRLLDANTLIDGTPLNESGLNSLRMFTDIPSTMLNFLKEREYNDEMVKFVNGELDRRETEWNGKGKDARSFLVRTRQDDEGNDIIRAIVSERYGVIDNAEAMEIIANSLPSLDDALASHIFNNGDDIFGNILLPDHMKSEPDSDYGVGIAFKNSEIRNSTFRISPF |
| Ga0102856_10009286 | F002398 | GGA | MIALISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNVIEKSKFDFFAYLDTIGIEHSKVGSYYFFQRKPK* |
| Ga0102856_10009288 | F019834 | N/A | TGTIFVPDNAEYEYDFENQIYTFKINDKTYSLIAGLEADDKEMIVTDENFKSHDIKPFEYEDAYFED* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |