NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102856_1004226

Scaffold Ga0102856_1004226


Overview

Basic Information
Taxon OID3300007636 Open in IMG/M
Scaffold IDGa0102856_1004226 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1371A-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1864
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2342Long. (o)-123.9167Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F026825Metagenome / Metatranscriptome196N
F028111Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
Ga0102856_10042261F028111N/ALKTLQEERDTLSERVRLLDIERHPNFVKKYEGKITGVFDSMKSVVGTDGDRLVGLLKSPENDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGEKSAEMSEAKSDYDSIISKYQQDNEEGTRAALESANKTWTKVSENARALEIFEPRENDDEWNTELTGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYSQVEVNKRLQAELAKYRGSEPGVSSKATAGGSRASNANGSKSEDFVTNVLKSLGR*
Ga0102856_10042264F026825N/AMTDHHAFIRDISIGVGGPIIGILGNAVFSDPHLKTASLALGALAALLTCAVKAVELYRKLKTEK*
Ga0102856_10042265F001272N/AMIKIELTAEQANTLLQLIDIAIKAGGFQNAKVGVPLAEIILEAAKSQAPAAN*
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