NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102906_1134070

Scaffold Ga0102906_1134070


Overview

Basic Information
Taxon OID3300007637 Open in IMG/M
Scaffold IDGa0102906_1134070 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1556A-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2022Long. (o)-123.941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F065113Metagenome128Y
F074047Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0102906_11340701F074047N/AEETVETIIDNIEEKLVDYMFELGDYSETNNKFYSDKEELFSQVIKELNNRLKNK*
Ga0102906_11340702F065113N/AMYETLEHWKQYKQEKELTDNSTKLVSEYDKESFDEWLNELIEKNGTTEY*
Ga0102906_11340703F000126GAGMRDYSITRKKGEWYDTRVVDSYGNKYQNYFETASEANEWIYFVWSKEDWFNSVDSQELLYKAIENCKRLDKNIKVREI*
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