Scaffold Ga0102876_1095892

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102876_1095892

Scaffold Ga0102876_1095892

Overview

Basic Information
Taxon OID	3300007642 Open in IMG/M
Scaffold ID	Ga0102876_1095892 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	806
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2319	Long. (^o)	-123.8812	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F040624	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102876_10958921	F040624	AGGA	MKSEKLMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSIRLERLKEKFEKI
Ga0102876_10958923	F006935	N/A	MDKHYAKQMIQSAEDAKQTLTIRKEIIMDDDTTDEQLGMIIRMMYRAKVETQNETILKTKENTRL*

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