NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102855_1169047

Scaffold Ga0102855_1169047


Overview

Basic Information
Taxon OID3300007647 Open in IMG/M
Scaffold IDGa0102855_1169047 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1370B-02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062187Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0102855_11690472F062187N/AMNTLQELEELKHLTETLSKHARESKVGVDSLLRQRERLKAHLFMKHRYNATIKDAEMKAKADKDLEELDEKIDTAELEFGKKWAEYEAHKIHIELLRSYHSTKRAELQQGI*
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