NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102898_1134900

Scaffold Ga0102898_1134900


Overview

Basic Information
Taxon OID3300007658 Open in IMG/M
Scaffold IDGa0102898_1134900 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1555A-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2024Long. (o)-123.9409Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023342Metagenome / Metatranscriptome210Y
F089877Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0102898_11349001F089877N/AMKIDLDKVDRTQFMVHEHSLNGEIVHLIQPQHIGTKWTQDNKHMRSVVVNYAGEVISASFPKFTNWGENPEHFPVPNSLKHCTVVEK
Ga0102898_11349002F023342N/AIEPDSELVHILEDVTFVKSSLETEMLNQWVKENFLTIPDDVVGKNVNVKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGYIVGFENVTFL*

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