NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102862_1011038

Scaffold Ga0102862_1011038


Overview

Basic Information
Taxon OID3300007670 Open in IMG/M
Scaffold IDGa0102862_1011038 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1449C-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2005
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2327Long. (o)-123.9168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015599Metagenome / Metatranscriptome253Y
F018537Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0102862_10110381F015599N/AVVKIKVMKLTIKNYEKLFRKEWDDKNYIEDIIENKDAYSITVWRGHMRQFIVLDRTPVENGYYTIGKWSNEAFCVRYPYWIKHEDIVNINSLMDKL
Ga0102862_10110384F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGKSRQNDVPWRVAQYIDIYLHHDNPNRIRIWKKQGMERKNLQLNDTNVMIARTLGSMGYSLADGVKHTQQSRPSSPLMAIRELQYQTQMKDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNRVSFSQLKSHYDIVMRGNSSSQNGGSFIHHLQSLVSPTNALGRRCKRYLHKELGTGKYRIATM*
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