Scaffold Ga0102867_1082072

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0102867_1082072

Scaffold Ga0102867_1082072

Overview

Basic Information
Taxon OID	3300007716 Open in IMG/M
Scaffold ID	Ga0102867_1082072 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	855
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2311	Long. (^o)	-123.8825	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016661	Metagenome	245	Y
F065668	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102867_10820724	F065668	AGG	MMYTIWVGGVEVTAHLTNREEAHRIASNWRNDGYTDVVVERYKPYEYHS*
Ga0102867_10820725	F016661	GAGG	MNYSAERYLALKRYELEVKRDKMRALLWNVSIGGIYAMVVIQVFTGVIS*

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