NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1090

Scaffold Ga0104986_1090


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1090 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10687
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033407Metagenome / Metatranscriptome177N
F097190Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_10901F033407N/AMNLNTFEEGLLDSIQTERCKKLLWSVIQLAVDDACKAPYKTRPTDETITALRFLFGDLYESGLDNYLMWLDVDSKEFKRRMVNAMFSERHDKFTDFERRAFRANYNWYL
Ga0104986_109012F097190GGAMTDEQKKILTYLKKRKTPADLRSVRLQTKIDKQTTVNCLNALLKKGCIKTSFRIDPFTKERVWEWVKDEYEAKKVSRPKKKFKPVLAKQEEGVDISFFNNPFNLRVA*
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