NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1157

Scaffold Ga0104986_1157


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1157 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11446
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002357Metagenome / Metatranscriptome567Y
F028151Metagenome192Y
F055549Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_115714F055549GAGMMTDYFVRAICSNATTATQLIEFLIMPNYDYECAGEGVVIVMDLPMDHKTPKCQVCGAEMRRIYTAVPFILKGTGWAGKDG*
Ga0104986_115715F002357GGAGMAFNLEDYEDVATLNKWFISNFPSGRSDISVISHDAEKGYILVQATLWRDSKDEQPCVSNIAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVESNPTFKEKLESRQNMYGKPGSKSAQIETILRDSFEADKPKEPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECPAKWAKLTANGKWYFEGGE*
Ga0104986_115717F028151AGGMNAWLEARDLGFVIMWAIVGLTIMAWVIHEIKETAFQNGYWKGRADGWNSHRRLINTKIKSDEVFDYDKQN*
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