Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1411 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1411 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14781
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14781

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (61.90%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y
F003964	Metagenome	459	Y
F009743	Metagenome / Metatranscriptome	313	N
F033005	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_141114	F001872	N/A	MNEWIKQALAASNGALWNNGSWGVRDMRGNPGSLSVHATGRAVDLSYRKSERHPNAIRKGAVSFIDIVVANANTLGVECILDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA*
Ga0104986_141117	F002794	N/A	MERQMSEGTAYNQGELTEETRKLVLEQTAMTNHTMAMFGLIDDIMAVSKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAHS*
Ga0104986_141118	F002421	GGAG	MKTCSICKGTIAYPEIQGKTHFVCDGRVPAQKLTPFMQGMIASQSSADARWTREEQNKVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGHIRNTGELAYAQRGGAHDHAQRLSVWAGI*
Ga0104986_141121	F033005	GGAG	MTRKLTEHDTAIYKQARAELLRDQPLCHWCKRNTATELDHLVESDKGGTIEDGYVAACKPCNSARGATYRNKKLANAKQNREKAINDFLYANEMPPTQLRIISDDLDQPELAVTGR
Ga0104986_14114	F001326	AGGCGG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYTVRALPQYLFLGIDTQGDLLYDYQVPIADQVLYAKTASDVERVAASGTVSYAPVCTWVTAADVMTYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA*
Ga0104986_14117	F009743	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTSPLYSDYCCWMHTILKIKGEQVGDNWRDWISKNPDIDIMPVLDETDPNPTDAAPTAAN*
Ga0104986_14118	F003964	N/A	MRQTKIGDNVAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSTVPLSGMARNWKTGSGFQMLPWIPGMKQKIAAKINTRAIKEYQGNTTNVGTFSIQWKGATGTMFDTSMAGALGRALTTRYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANREIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1411

Overview

Ecosystem & Geography

Associated Families

Sequences