Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1561 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1561 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17581
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (60.61%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

17581

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (60.61%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N
F041650	Metagenome	159	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_156114	F041650	N/A	MREDIQLSLAEVQMPRTRYQLEHFVIGAHDTPEMQFVQVCRELEALHYTIKEVAMQVRKTEYEIEDLREKGDRISQVEADIKELGLERTRLVAIGAVREYDTLTEIYDAIPHFTREQIDASQPDYWQARLGRQANLQVMSGSANWAHLEALDQIGVLQPMIEAQQAKAKELQQ*
Ga0104986_156118	F020354	AGAAGG	VFAKLRDELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLALHLAGVLTKDGEDDGGRSED*
Ga0104986_156119	F003378	N/A	MAKFFDLGQRLFSLFLANALPAVTTGAVIGISVGKSAIMAGAMACIKVVSALAEASTDGELSSEEIKAAFGKKK*
Ga0104986_156121	F021759	AGAAGG	MDAGLATVLAAAVATFGGIVVALMQLKGFREENKADHAIVQKRLDTVIDMVGKQGAKLTSHLDWHLTKEPTKDLPQVKQVATRKKK*
Ga0104986_156122	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVQSVGFLLATSDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKHIKVLMDLQTNSPDR*
Ga0104986_156123	F005528	AGGA	MRILTAILATLTSLTMSLGIAQAVSAPAQPSHAVIALQPLWQADRLDPIQPIRYRHGDVSWLPSLAKQAGWPDQAIPQLTQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDTSRNKWAAICQEMNICTQPPLLDPLTNLKAGLVLYNLSGFEPWNPCNWRVCKVSTTSLP*
Ga0104986_156128	F025023	AGG	MMDVGVDRTCVLQLQSDFDSLRPHQRAMVKNIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAECAEQFAVICRAIRWDEQDIVWNTSTDSFGFPKQKASK*
Ga0104986_156131	F040082	AGGAG	MTQDPYAMSQEIVELQTRVAELSVALERVTEQRDNAVDAAESLHQELEASRDRIKTLGQQLDRLRIHLQQGIEL*
Ga0104986_156132	F058107	AGGA	VITIGMDSFIVCQLCDGEVRLDTKRITGCLCDPDAPTWVGIEPDGRVLTFSQSHYEIVTDLGPRHHYD*
Ga0104986_15615	F011391	N/A	MLKLMAKYQVVEGFTVLDKQYPATIDGDEIDHLDSLLQSGRIVPVADKSTSKADKAGDK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1561

Overview

Ecosystem & Geography

Associated Families

Sequences