Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1648 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1648 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20923
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (71.05%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

20923

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (71.05%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030689	Metagenome / Metatranscriptome	184	Y
F033721	Metagenome / Metatranscriptome	176	Y
F035221	Metagenome / Metatranscriptome	172	N
F037622	Metagenome	167	N
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F091592	Metagenome	107	N
F096882	Metagenome / Metatranscriptome	104	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_164818	F098923	GGA	MFFYEEIDRRHIDALADILEDSDVAPGKLMGNEAGPLAWIMNQMLYDKFHGHGWELDLLTGRFIQTGE*
Ga0104986_164823	F091592	GGA	MISAQFTRGDQDDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRVTKNRIGKLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKVAGAMIDQATLNRVIKRGIKNVN*
Ga0104986_164824	F102824	N/A	MTPVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGKAQDAANLWNAYAIWCQDRSGKRKRR*
Ga0104986_164826	F039993	N/A	MKLVLAWICYWIGDLISITIMRYGYGYSLYNKLMLLSSDLDDNGVIWK*
Ga0104986_164827	F033721	AGGA	MRWIKKEIDEDGKTGWAVYYDETGEGNQEEWKHRDTYETREEAVAACRIFEWEDYDCNDK
Ga0104986_164828	F039994	GGA	MENPPTISEMGDAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPCPDESEENALDHLERAVVRALFAWMQLKKGLPRL*
Ga0104986_164832	F096882	AGGA	MAHNKRSVNQSIKAWRALERALNDLESFEACAKWVIDNPHISKKLSGAGLMAVMAEDLKKKKH*
Ga0104986_164834	F035221	N/A	MYGCNTQTFYMKRILIAMAVLVAPVMGDDFAGGVYDSGNAVFSGGKGLAITSNGLIVDNGILKLTPNGCYSSCGDVYYGGNEIVTKTGYLYYGSNGTKVQCGEYYSGTAGSTYVFENDSE
Ga0104986_164838	F030689	N/A	SQARTGAQQAAFQNYVQANQALPGQFGQAPSTAQPFYQAVDQGIPVNLTNTFANLYGSMADYQARTYGAYTAAKASQPTGAQQFGAIASGIGSLIPNISI*
Ga0104986_16486	F037622	AGGA	MTKEQILKEYFSAMGRKGGSVTGPTKARKLSREHYQTVAQAQRERWDKWRLENGRTAIKRER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1648

Overview

Ecosystem & Geography

Associated Families

Sequences