Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1719 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1719 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	25775
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (78.72%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

25775

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (78.72%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F009529	Metagenome / Metatranscriptome	316	Y
F020909	Metagenome	221	Y
F024097	Metagenome / Metatranscriptome	207	N
F025466	Metagenome / Metatranscriptome	201	Y
F054668	Metagenome / Metatranscriptome	139	Y
F058137	Metagenome	135	Y
F096878	Metagenome / Metatranscriptome	104	N
F101146	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_171918	F054668	AGGAG	MGISTRQVTVTTSPTALVDATQEAEMVYLHSSSGQCFIGNSDVTTATGYRMDNGDKLTIENKANGIWAITSAGTVTMMVLAIGK*
Ga0104986_171921	F025466	AGGA	MMLDKVKIEAVVKTYLRAAVAAVAALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK*
Ga0104986_171927	F058137	N/A	MVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKGYIK*
Ga0104986_171928	F020909	GGAG	MITKRGKKVRAIAIAVGIILIWQIASNLWWVGIDSPNAEFLGWCWGSMSECVVL*
Ga0104986_171933	F096878	GGTGG	MNREPLFSVHNSLNGDFVIYLEERDANLDVVEDILAAVPLVQLQGIQSLILHDLKSIESARLMDKARSAVPDLAIKLASISESEALTLAEQLITAVKFARAMRSQPVATKLELVK*
Ga0104986_171934	F024097	GGAG	VANPNGRKGALFETSVMKWLRERGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE*
Ga0104986_171946	F009529	AGGAG	MNCTICDRATKHEGACLTCELKVKACLTELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHIMHGWEVPIRIGRGLTPPAFVDREPTTDAEVDATCSFHLTHLDFTLLQPWAVEFASDVYGLHAKGRAAAKKFSEQARRIPCPTDECKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIAKRHDIEKRGSLYNFGDILKVVQL*
Ga0104986_17196	F101146	AGGAG	MAYTVISDREVCGKKKGESITDKELVDAGVSAQALTAANHIKASNAVSPSIKPATEGVTN
Ga0104986_17199	F004344	AGGGGG	MDGLSIKIVTNDDVEKVYSLRPRIIVDFEQKYNKGLAKLIGEEQKLEHIYYLAWLALKHNGNIIKPFGGDFLDSLKEVSLVADPNSESTETA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1719

Overview

Ecosystem & Geography

Associated Families

Sequences