Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1720 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 25799 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (71.11%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035302 | Metagenome | 172 | Y |
F036680 | Metagenome | 169 | Y |
F039535 | Metagenome / Metatranscriptome | 163 | Y |
F059960 | Metagenome / Metatranscriptome | 133 | Y |
F065780 | Metagenome / Metatranscriptome | 127 | Y |
F074589 | Metagenome / Metatranscriptome | 119 | N |
F081323 | Metagenome / Metatranscriptome | 114 | Y |
F082668 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_172012 | F039535 | GGAG | MRKIFALCVVSLIALAGVADAAEAPKRFERVQMAQHPFDFVPETKRSVPAWAKCPEIWNQLRDAGWLEKDVVRADQIVWRESRCIPTAHNKNDPNTVQGVKGSLGLFQINLFWIQRTAYYPRGYLQTVLNREFAPTDLFDVDISIASAGALIAYDRGLGRCGWSAWLGC* |
Ga0104986_172013 | F074589 | AGGAGG | MTPTQIEGMIDRICGLYPSSPVSLQKAKNAFTQDEFLLYQTVEDARKVITVIMDNHDKFPSLKEVHKAFKLLRKPAIEQTLVVCEICDGNGWDTGRRWNFETKEIICEAFTKQSMGQTYTYVVPCKCREFKAA* |
Ga0104986_172026 | F082668 | N/A | MSDALATIIVALISTIGLIIVGLMQLFKKEAREAAIENRQDHAIVQQQLRMIFKSVNRVDDKLDKHLTDHAEGTNGKPAKRN* |
Ga0104986_172027 | F035302 | N/A | MKRPYTGNKDGLAAGERKGLRVFINELTKLYPAIWNNGSYVNRPMRGKKELSVHATGRAVDLSYRFMAKEKRGIPEGGRKQAMEAMDFLVKNADAFGLEAILDYFPMPHGRGWRCDRSAWTIYNTKTITGAPMGDWFHAEISPAMADNPDAMREAFAQAAKPVA* |
Ga0104986_172029 | F065780 | GAGG | MKKIKNYFVDNTWTWVGTGLVLITLSGTTFRQALLLTGIGIVIHSVLTLGSKE* |
Ga0104986_172041 | F081323 | AGGA | MANYKIISENCTLGAQGSNISSDDLEGLNVAALVDGGHLAEVNVKVSKQEPKESDK* |
Ga0104986_172044 | F059960 | N/A | MSKQIDALLTERAGYERRGLKDRVEAVDAALRELGFDHKYQSEVEIASIEPEVETAVVKRGKKKKV* |
Ga0104986_17207 | F036680 | AGGAGG | MRITNHSLDHIELIASGDTALFEIRLIVAMHDWSDEEADAGFDEIGALGWLMNLLHLAAQGEDIKTGAEEFLKAMMTLDEQRVYLARVERISMNEEETK* |
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