NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0104986_1739

Scaffold Ga0104986_1739


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1739 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)27198
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (55.81%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F007911Metagenome / Metatranscriptome342N
F009066Metagenome323Y
F015449Metagenome / Metatranscriptome254Y
F041639Metagenome159N
F042872Metagenome157Y
F043823Metagenome155N
F044969Metagenome153N
F057981Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_17391F041639N/AMGRRPNTAILAQAAATGVGLRQARRQLEKGQGVATGKAMKPIAGIGLDGEIDRLESLAATLGEAAKEASGPERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLLGMPKRLAPICAHRTAAEIQKEVENEVGQVMRQVQAAL*
Ga0104986_173914F007911AGAAGMPAVTMLDRLIEAAFQELLSVTVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVRGSGVFAVPVEIVVDDSYDDTTVDAHTQKCSKILQAFYDSSTLTARLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTFKLAVIAYPNSIAS*
Ga0104986_173916F015449GAGMVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFSTGGDQDAKAEMERTWADMKSEPEAAIRYVRAALENRETLLGLMKRAEPILSIKRGSQTLLISERASPELKRAMIKKL*
Ga0104986_173917F057981N/AMSEEALLQELDNSLISPDRFFKDQRLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDAFREKLMDWIAEMTEDDRNTASVMCSAILAEANKARVNVIPSAIAAPPGNA*
Ga0104986_173919F044969AGGMSASLTVDASKLQKAMKAFIGNTKAEAAKEMRIQARMLCVSLANSTQPFGFGNDVKKVGEKAVTKDIDRVYKSAGTASKEIAKLSLPKGKTKTQNAEQMAKALAALVLGKTGGSKRKRAESAQQLLNRIRQQPYVGTQVGQFDGGKSHESARYGKSKRVPKNQFVRQIVTKDSPLSRYFKDKRENVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVNDKSQTALGTFSKPYVQMTNTIPWINNVISTGTIQKSIDIQVLKMIKRLSIIANYESKKAGL*
Ga0104986_173931F006891N/AMSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTAWELIKRRFSF*
Ga0104986_173935F009066N/AVEFTVTPEHEKHLAGILRDLSRDLDAKYRKGQDQHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK*
Ga0104986_173938F043823N/AMKKVKTNLTIDPKVKRNGERLAKKGGLSLSAFITTLLVKELAKETRR*
Ga0104986_173941F042872N/AMQSIINQNKEGNRSVGSNPTPSEAYHYNDLRRSSNTAVITEPKKPHYQQVNLNKRGGYDLGPEAYVYHPNPAVCRMWHAQHEASK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.