Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1865 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 37617 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002722 | Metagenome | 534 | Y |
F016149 | Metagenome / Metatranscriptome | 249 | Y |
F066596 | Metagenome | 126 | Y |
F094997 | Metagenome / Metatranscriptome | 105 | Y |
F103142 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104986_186511 | F103142 | GGA | MGLNYKDFAWGERITSDEDSVDRFMHEGLVIPHAPSVGDIWHAAEWLATYGSETAEESEGLANVIAFLILTAESKEKRTATNTAKRNYAKEHGLKVSQVRIKK* |
Ga0104986_186526 | F066596 | N/A | LWKYWKGKVEMITPAGIENRLVTLSKEIDYAHANLIEAENKYHKSKSDYEIAIAKARLSFGDNKMRVQDVSDKALLMCEKQFHELSIAEAIVKGARANAGRIRTQVDIARSIGTSVRASLEM* |
Ga0104986_186548 | F016149 | AGG | MVAPDKGVRETEIGRKLYKPDRGGIYTVENASHARAMKAEGFFEASLNPYDVKDGQRGFSCNACGFNGWFKKCGRCGHETDMTIGDGD* |
Ga0104986_186550 | F002722 | AGG | MAGRTGVRATLYSFLNTPAITGLNQVFTSFPKTINFQENSTAGQSSRAALIIFIQSEAETRLAIGGATNGWKRVDYSVVLQVYQHSLLRNAEDVMTDFDTLIDAIKTRLRSNHNFGDTTGNLVWQGAEPMINAQYGEPTTLKEGATETFAELQFVVTEMIQA* |
Ga0104986_186554 | F094997 | N/A | MVRASVNKAVVGLDAGAMAARDEMMMTLIQLSKEEIKGRRQPGEKAQAGQPPMNRTGNLRRGITGERYSTGFASHYALVGPTMIYGRAVEVGGIYAPPSWQNTSAMRGFPYMQPAFKKFSTLAPAIISKHLGLGNA* |
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