NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1896

Scaffold Ga0104986_1896


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1896 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)40752
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (79.17%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Associated Families15

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F000857Metagenome / Metatranscriptome858Y
F001059Metagenome / Metatranscriptome790Y
F001538Metagenome / Metatranscriptome674Y
F001915Metagenome / Metatranscriptome617Y
F002099Metagenome / Metatranscriptome593Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F006264Metagenome / Metatranscriptome377Y
F012214Metagenome282Y
F014235Metagenome264Y
F017297Metagenome241Y
F027490Metagenome / Metatranscriptome194Y
F034150Metagenome / Metatranscriptome175Y
F098944Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_18961F014235N/ARVTVPSKNEPDPALEKIKADDKKAVPPSLEVLAKMAQLRSK*
Ga0104986_189619F034150AGGMQNGTNAPCKPQFMGQIIKFRSPHANVMLYDICKHNENYDRLEWWALNNPSEAQKQSAFLAI*
Ga0104986_189620F017297GGAGGMKVTEQKNGNYTTFERLAYNGYYVVKLYKSGELADKMMADSYQGARAWLKSFNLLAKNS*
Ga0104986_189623F001915AGGAMEWTLAHPLHDVDDIVNMADSVFGHEADGILTRDKAVFRKNVTVATTVQLFDRSKEFIAVCRGPKVIDTFLGQAEVNDALLGYCWFDRGGYTTYANDEISNAKFHHVDLELSPRLRVRLINEMIDQHILWADRWYIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGMECLKK
Ga0104986_189624F098944N/AMKLATGQIEPKQAIETVPVVDEFDMTAFVPRSQKAAGRPKSIVNKVTEYGALFNKLNDERTSKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFLDSLRKV*
Ga0104986_189627F027490GAGMSYGTVINGGAQMRKGVTKGINDKLSTRTAEDDRRATVAGAVNSAYKVNTISSQHTNNTKGGAFTKPSNRSKDYAA*
Ga0104986_189629F001059AGGAMATYDIDALKADLPTAKELAQFVYDKTDSTVSLDLIGKPKEEQYIVAKNALEGKKVPAEYLTGFNPYVEKKDTIPEDPLRKMPKRSIDLPDEDAQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKVPVGEKLNKYGQTVPEKYTWIDPRTEEKVLRNPDGTFTKDGRGVHTFLIGEKGGGVWSMIDKDIVSISAKNIADPWA*
Ga0104986_189630F006264N/AMEDPSKIFQNKLSSQAEVCARKTLEWLQKDLQGLQKLQPDQVYYLAYAAQILLDIRDNYGKK*
Ga0104986_189632F004695AGGAMLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSESDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPLRSPVTQYKEVEGTRDQLRVFETLAGEKGLTAKRQNMRKIDVDLQGAMQEAMAPDESEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETASKVELNKAKVQESGSVTALNIRKAQDIDTDDMFEALAAKKGKLSAVQVD*
Ga0104986_189633F003521AGGAMKSLVLNIRDYFNRRTKVIDSHKEANVNRKALVIENGECAKRLLRNDDFALLFNLYRFYLLEMLEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK*
Ga0104986_189636F000857GGAMEHGMELNLNNEEAKVNEDYYTGGVLSGGLEGALIKNDKMFNEVKSGTWSQTFNTPNMNYKVGAIDGERYVQYEQKNVESVKEYCKERREFYKMIGTTDNPLFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK*
Ga0104986_189641F012214GGAMSDYSRLRTPFTSMSFTPDVPSNALGPNEYNSGKNIEADVRCIKKIFGEIQIASTITDMPIFMEGGFRSETSWVYIVATRNSSSQGKWWMITATGISNITPGVGANPSAYISGYTEDISITSSWVGNVFFINDTVQNPMYFLPTSNEITVTSDASWNYDVGVTSTRAGFVRNFCSPNVGNILISGNLTKVIGGTSYNYPTTVRWSQAFANQGYPTTWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNTTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFANLNPTYAGRMFMVNNTQKYQIEIYYPDLNSTGWCNKMLSWRYDLQVWNAPKDIQNACMGTEGPRWIDSSPDYFNLSSRAVVYARGGVSSSRLIETSIGNSFVGSAIDSQFERTNIALQTANGPVPYSSKVYIHRVLPEIAGSGAINITVGGANSTAQTAVYGETGITTIDTDTPWVPTQQNTFRTVALKFGSNDATDTWKMSALNMQATVTEDAF*
Ga0104986_189650F002099N/AMGVSVRWLIALALILSLHSTGKDLCSVREFYSIAWGIHDPTERHRLMVEWLTKHQYLCKSTDYRVIWNNMAEWGGNSDSHHLRALVIHGYKEALEREKK*
Ga0104986_189651F001538GAGGMIDTIKLFPTVQPSGYPDKHDLAQVKLEKQHEMNKANELAKQKQVQLQDLEFEIYTKKVVQEQLRMEIFTNRKLDLYA*
Ga0104986_189656F000166AGGMPNIPTPEQTQIFAQSVKKWQQVLSLGDWRIEKGIKPAKQAMASVEFNTQARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSRDSNGFT*
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