Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1897 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1897 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	41067
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (69.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

41067

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (69.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F006019	Metagenome / Metatranscriptome	383	Y
F007861	Metagenome / Metatranscriptome	343	Y
F009394	Metagenome / Metatranscriptome	318	Y
F060718	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_18973	F007861	AGGA	MVDKTLEEVKRGEQAAVILDNPIYQEALQKVKDSLIASMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKLAAIQTDRPKFKIFG*
Ga0104986_189733	F003066	AGG	VTKPVAYLFEEFDVRTGDLMKSYLWSFHPNELSYLRDLKGKTHHIKITPLFPGEPVEEYKGMSKYDSKRLVEANNGL*
Ga0104986_189737	F002037	GGA	MTKIYWIFIVVMAALAIWGTEKAIGQTTTILAPDGSVTICQVGSNGIVICV*
Ga0104986_189742	F060718	N/A	MIVLNILNFIGLAILKLLVVSLLFVAMGFSILFMYAMQYLTQALAYIDKNVN*
Ga0104986_189744	F006019	N/A	MTFITENNIANLYSALIEFPVFDEYKLPPASKVDFVVVHDDTICGQYEPPEAGEPHVITISTAKCGHLDTVIKTICHEIIHMICYLESPKTDKYVSHKGLFLKLQKRVANTLGYDPKEL*
Ga0104986_189745	F009394	AGGA	MVKNDTDARLSTHEEVCAIRYEQINARLKRLEQILLGTAGFVIVFLLTHFTK*
Ga0104986_189750	F001848	N/A	MILHYIPKDNLRQHWDYVKHGLELVRQRGHTSWIVEDVYCDCYENRSMLFVGIINNKAVGFVVLQPLGDTLHVWASWSTINDMTLFQQAWQEIQQIAKQGGKTKVTFNSQRKGWERRARQMGFKPQTWEYTL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1897

Overview

Ecosystem & Geography

Associated Families

Sequences