Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1960 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1960 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	61750
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (73.12%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

61750

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

68 (73.12%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002098	Metagenome / Metatranscriptome	593	Y
F010016	Metagenome	309	Y
F016267	Metagenome	248	Y
F038087	Metagenome	166	Y
F046241	Metagenome	151	Y
F051701	Metagenome	143	Y
F061801	Metagenome	131	Y
F066456	Metagenome	126	Y
F096871	Metagenome	104	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_196019	F010016	AGGA	MKKTAQNDITGDWLQSKPNNEQFEKNWDLIFGKKRKEVLPEYELNKSTGEVQKVDNGDTTNSQK*
Ga0104986_196025	F100665	AGGGGG	MAKPYIKVVSIKDTKQGDCKLTLDMNQAGREVILQAGIQTALADYMVANTGKLSLWKRLQICWSILK*
Ga0104986_196028	F096871	AGG	MWVFQLALISGVMVGLELKFLEEEAPYTFSLVIDLFIIRLILQKLKYVR*
Ga0104986_196039	F066456	AGGAGG	MGFHINVWNMPRIETYDNAKEVYASKTAVRGGDQSVRRIGDRYEKEKWLRKDMLDGIEVYTAGYYRTDLVRFYPTHKEITLGSYPSRSTQFFVEYVAGIHMYDFEHKRYVPAPFTRSPMVKNNQIECFIGSASRLHMNAHDWYKLDYNNEPLNHEQFEKPVKYRFDASQMRELRKPYKKLLKYADTMLKLNSDGLENDEKLSEEVNQYPNKLDLYADENKTYLAYYYLVRQCQHNRWHSSGYITYCNIGMIKRFLDKQIKIENPQVLVEVKPETNA*
Ga0104986_196046	F051701	AGGAG	MQVQINLNDDQADEVLVEALKSGYAVNLNFPEEPNFYEISQAFRTLLAYYMGDKECAKYLHAMAKVRKTYNAKRLVEANNGL*
Ga0104986_196048	F038087	AGGAG	MSKVTIVLSMPDHPVSRFLFDEYINACADANLMIRYEPYTSDMYAELNDKALEIEKKQALTELENEILNNVACVNGSCED*
Ga0104986_19605	F046241	N/A	MKSVQIVAPGHIHAVWPVVRGLLNTAIINYEYADYDVEHLKVLLVKEFQVLFVVLEDNNIVGAFTVEVITYPNHRVAHTTTMGGKGLFDKNTVSQYEEWCVSNGITKIRAYAQDAQARLFKMKLGLNVVTHVVEKTL*
Ga0104986_196051	F061801	AGGA	MKTKPIFKTQASPSYKGYDREIYLSEYTPINKEHYRRLRFCAVVSVGINIFLLLVMVIR*
Ga0104986_196070	F016267	AGGTGG	MSTERELAEHGIEIKHIQTDVDTLMEDMNELKKRLDAIESALNEIKGGWKVFIFIAGLASAFVSWVVTHWLK*
Ga0104986_196079	F002098	AGGAG	MAYKSGADGITKQGKTKGKNLGDTGPNVGIQNGPIKHTVGKLNADMKKMGRGLAKIAAQKRG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1960

Overview

Ecosystem & Geography

Associated Families

Sequences