NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1966

Scaffold Ga0104986_1966


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1966 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)63746
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (86.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008750Metagenome / Metatranscriptome328Y
F012327Metagenome / Metatranscriptome281Y
F058795Metagenome134Y
F071151Metagenome122Y
F074585Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_196627F012327GGAMIDKYLEHLSKKIDDKVSQLQEFLADGNAGDYAEYKKACGEVKGLLTARLFISDLQERLKTHDDE*
Ga0104986_196636F074585GGAGGMTNQKQIRAAFWAAHPTLIRRRHRYAWSASDKTAELVHHVDARCAFADYIDQLARDGIISNELAQRVTL*
Ga0104986_196637F058795AGGMNELHPLFAAILRPYTPPEPTPEAIDAAMLADKLADGYNRRNIERAIKLELKNPRD*
Ga0104986_196678F071151GAGGMNCCNANGQCEQGKDCPVRKQRIKEVNDAYANGYKDAQLDDPYEDIADTFKGLLTVMTVVLCVWVVCLLIWGK*
Ga0104986_196683F008750N/AMKKLLALLKEPFKRPTPLEVIAAELAHAHLEKLEAETAVEYAQSIVDYNVNRIARLNARVEEYK*
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