NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10030

Scaffold Ga0104988_10030


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10030 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10207
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (25.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002243Metagenome / Metatranscriptome578Y
F013631Metagenome / Metatranscriptome269Y
F015080Metagenome / Metatranscriptome257Y
F091925Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1003016F091925N/AMTSISLTSGQILDIMSALEEKENALYDADNKHLAAYYMNLGVQFQRIYDKLEDKVPENRVANLVLVSD*
Ga0104988_1003019F002243N/AMCSTLNSELAMSDFPTLHSKDGTMVVSFYPVKTPFGDISKEWCLQVLCWEGVSQMSKKYLNRVEKSLAIRDRLALNYVVTADNSNLPQLGNPFYGAV*
Ga0104988_100302F013631AGGAGMIVSEVFHYTTSRWDWIDCNVNQMWIEEIEESPDCYRYVAVAYNPRKDASMVMSEPRCYADTLNWVRSWCRSFCILPEFSIAV*
Ga0104988_1003025F015080GAGMFDLLKFESHHLPGAVQGKHKFENDWEISVVAGSSNCGLYGNLQDETYEVGIIRPNGNMTEDVSGWNTKQEVSAMMWVLSQL*
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