NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10086

Scaffold Ga0104988_10086


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10086 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10645
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (37.84%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004208Metagenome / Metatranscriptome448Y
F013631Metagenome / Metatranscriptome269Y
F053990Metagenome / Metatranscriptome140Y
F073458Metagenome / Metatranscriptome120Y
F093764Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0104988_1008612F093764N/AMARRSKSASRQMVESLKDQLTEYFRENVFDDYDYEDLTGSELFEALVETFKELENDLKEELKPIQYVLNKLDPEDSETQVLNG*
Ga0104988_1008613F073458N/AMSAKLIALAAEIVDTNPAGAQLIVNLTNAETGAEIVEALDNYDSAVLENHTESVETEGEVTLTDADGVVTSV*
Ga0104988_1008614F053990GGAGGMIDTCVLHDDYEDFAEKYLGIDYDDYVTFELGLPDEDELEIEYPVGI*
Ga0104988_100862F013631AGGAGMIASEVFHYTTSRWDWIDCNVNQMWIEEIEESPDCYKYVAVAYNPRKDASMVMSEPRCYADTLNWVRSWCHSFCILPEFSVAV*
Ga0104988_1008627F004208GAGMTYSLNQEAKAFSYTREELFNTITNIVAHPHKTITEHDQSRALAIMVVFDDYFSNYTESDNNGGYCVYERDATDFTDFVRFKLGIDDYDYVNVDEVLK*
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