Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10109 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10109 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10879
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

10879

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F007467	Metagenome / Metatranscriptome	350	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1010910	F041081	AGGA	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCFAEVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDSRQ*
Ga0104988_1010913	F003304	GGA	MEERKMKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIASDCPNLGDDAGVFCAFDEGAYLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLSNQIQSDEAKLVELGR*
Ga0104988_1010914	F021063	GGAG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYALPT*
Ga0104988_1010915	F022371	AGGA	MLCLLDLAGVVWVISWFLLYSSLTLSAIYCAGYIILKLIDYIRKELDL*
Ga0104988_1010916	F020665	AGGA	MKKKRNKITLVKTSEQTAVRVIVDIDDDLYEALAKAGRHHLAKDKMACFEYALNKALLELCEELK*
Ga0104988_1010919	F004010	AGGAG	MPLGKDVSKNMHELAMDNRKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS*
Ga0104988_1010920	F002826	N/A	MQVEAKDRLKWAREILSIARDKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVMGDE*
Ga0104988_101095	F007467	N/A	VNEKEAWAKFEAGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISYANKTWRN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10109

Overview

Ecosystem & Geography

Associated Families

Sequences