Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10122 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10122 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11019
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11019

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (70.59%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F010603	Metagenome / Metatranscriptome	301	Y
F025458	Metagenome / Metatranscriptome	201	Y
F039992	Metagenome / Metatranscriptome	162	N
F060708	Metagenome / Metatranscriptome	132	N
F081071	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1012210	F039992	GGAGG	VSLDEVADLKDRVASVSERLARMEERQVTLYHMVERSLASFGDLGNRVTAIESLKTKMLLVAAGLGAIVSFAWDFFKSKLINGG*
Ga0104988_1012211	F003112	N/A	MIKRIATWLTNLSLRFLMTRSEYACFKEALKFATENNQMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTDAVVHLAVALKYLEGRGRES*
Ga0104988_1012212	F025458	GAGG	MSLKQEIFINGVYSHTEDTRTIDEAHEENLTRIRELITAKIVEAGYDEVWQRNAGLGVLTNLEVEQGREFIANLRTAYHEYKARLLAATRDEADGIQFNLP*
Ga0104988_1012216	F010603	AGGAG	MANEFVRSQRKAKGRALRFDSQGFTNVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0104988_1012217	F060708	N/A	PARLALVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRQKNG*
Ga0104988_101224	F081071	GAGG	MTPMEYIELSGVPESKWPTFKEWFNWHEKLDLVGVAKDGDNIAGVAIARCLNDGQDPVHYKHTEDGDNVFVDLTVTSTDGISNALSRKALKCLLSILWDRFGPRRRITFKRNGAYKEYDYLKFMRKAMA*
Ga0104988_101226	F000635	GGAGG	MTLSEIAQFAGEKVGKTDSDTLTFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTITLGSNVETPLSVSFDKSEVDPIDLATIISQDADLLEDTRTGDPVLYHFTGRNTSGIAQLDLYPRLATAGTESLRVVEKLKCLTRTNIVVDFPPSTEALNDELRLPHVHQVILALTHADALERERQYAKAQAVVQSANADLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10122

Overview

Ecosystem & Geography

Associated Families

Sequences