Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10167 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10167 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11429
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11429

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (82.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F014489	Metagenome	262	N
F015570	Metagenome	253	Y
F029673	Metagenome	187	N
F032957	Metagenome	178	Y
F047564	Metagenome	149	Y
F092060	Metagenome	107	Y
F093496	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1016716	F047564	N/A	MQEPSSTESEKATPCPWLSQLKPYNAQETFLEYLINHYALMAMNPATIEQARHRTAELKKDFPTLGISIANRIKELKNEMP*
Ga0104988_1016720	F014489	AGGAG	MEMKQQHYAILKRLQHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQTPRVSKDRVAAGTTTETYDGADLKQSGIRVGAFDFLKYPSKFGDNLVYPRVSL*
Ga0104988_1016721	F004231	AGGAG	MMSVKPKDFQHEICVYLEGIGECLVCFDILTPSDELDPDHSDSYEIDFAVFDEQDKHITYDISRKQYNHCENKAMDEMLDITTQWHKEWESV*
Ga0104988_1016723	F029673	N/A	MGKTRMTKAEMIQHLRMVAVSENTITGMSNAFDLGAEHERDVVSSIIFNMVKDQHLAQNIVDTIRVRE*
Ga0104988_1016724	F015570	GAG	MNDKLDQAFDELEFNVNVTEEMRKAKYLSEQREVATGVTDGTIQRALVRDLTENLRTLPTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRQMKR*
Ga0104988_1016728	F032957	AGGAG	MDDFNPTTRMFSRTLEEAYPKEYVNEGIFEGPYYSAPHINDVWVLFGLITVISMVSVALWRYF*
Ga0104988_101677	F092060	N/A	MGVNMKLIAKKQGYEIWAKFDHDANVYELFFDQECETYTGWAVDSLKDALSASKHILDEGTARA*
Ga0104988_101678	F093496	AGGAG	MTFIQSAIDNFPEDQAHIDAEFALDMFKTEGADYYHQWLIKERSCVIHNVFDDDEAQIKRYIDKFNELTASHTNFYM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10167

Overview

Ecosystem & Geography

Associated Families

Sequences