Scaffold Ga0104988_10273

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104988_10273

Scaffold Ga0104988_10273

Overview

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10273 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	12730
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F065527	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1027312	F002009	N/A	MNPPTIGELGEAAADIVWRVMGKGSDKSSYGEWFHVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERAVVRALFVWAQVKKEVPRL*
Ga0104988_102736	F065527	N/A	MKATIMLMALLVAGVYGEEDEIESSQQELADFCGGVLGKSAVITGRNTAVTSDGEFVSYNGRGFATSNGYYGKNGSQVFGNGKLVVRSKNLFYGSSSSCRNGNSYYDGDKSSWITKSSELDD*

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