Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10364 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10364 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14112
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (32.56%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

14112

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (32.56%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (38.46%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F016800	Metagenome / Metatranscriptome	244	Y
F027828	Metagenome / Metatranscriptome	193	Y
F037191	Metagenome / Metatranscriptome	168	Y
F048940	Metagenome / Metatranscriptome	147	Y
F054636	Metagenome / Metatranscriptome	139	Y
F058096	Metagenome / Metatranscriptome	135	Y
F059435	Metagenome / Metatranscriptome	134	Y
F061794	Metagenome / Metatranscriptome	131	Y
F081258	Metagenome / Metatranscriptome	114	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y
F091925	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1036410	F027828	GGA	MQTLIDKVLMTEELLNEKQLTALRDMLYVYKELQSEVHNYPPEDTLFTQTQFEIFDIFDIK*
Ga0104988_1036411	F091925	N/A	MTSISFTSGELLDIISALEIKEDRAYDSGDRNLAAYYMNLGNQFQRIYDRLQEFVPENRVANLVLAVN*
Ga0104988_1036413	F016800	AGGA	MLDAYTDYPIEGLGDTEFEKAPIRKCTILTWDRNKYCDVLVYFVDEDGDLRGCITNFKQWYLYKNEARLDDGVQFTDDELKTLSWTY*
Ga0104988_1036424	F082582	AGG	VEGVRPTHKRPNSILIKMTAVVDFSKDVMLGMLRKGQTGTQILDILNVLVPEQTELTREQVCDDLGIADCPENDDEIARAMSAV*
Ga0104988_1036425	F084145	N/A	MFVICPASFDLVDAEWFDNVYEAKEEALDWSVELAGRNVIVYEALEDDDGGAYDFKPVSSICA*
Ga0104988_1036427	F037191	N/A	MTVAEWIEKLKEFPLDQEVKITDGYKCQFYQGDFEFQLFEDVDGSTFVDIGIGGFDEEDKTDNR*
Ga0104988_103643	F013631	N/A	MIVSEVFHYTTSRWDWQDCNVNQMWIEEIEESPDCYRYVAVAYNPRKDASMVMSEPRCYADTLNWVRSWCRSFCILPDFSIAV*
Ga0104988_1036430	F058096	GAG	MNAQLSIDECKVMWVVGALERLATLGLIGPDVPLKLSADAVEDYIQIDEHRELLFESDFEIASIFTELANDEAENTNPDDIKPIIELLLEYKNNRTEIVKYALSHQLI*
Ga0104988_1036434	F048940	N/A	MMNEVQSQEMTTAQRMEKQFFISFIRLVDEVQGKQKLPSQIQSNRKSAWVKQTQNPKQKKDALARV*
Ga0104988_1036441	F054636	N/A	MTIKLEIDDYEKDLLIDTIQHRLDTDKILVINNNLKEELEDLLRKVEEDEYV*
Ga0104988_1036442	F059435	GGA	MNTYNISVNGNEILSQVPQNDLQENLKLIRGLVWTSGGNDEDIIVSLNKNEGHCNE*
Ga0104988_103645	F081258	N/A	MTFTFPRLSGGVYHIQKDSNTLGFIRKVNASKWMVVDIVDTPQHVTKTLKEAKDACINLIIFESVDNTPEDVYNDSVEVDEINSSLNKVLEGSLKTYRQIPGTDEFEEVCPSEFGFAEPTLEPIMF*
Ga0104988_103648	F061794	N/A	MPFTKKFPQSGETIHIRVPKCYAELIEELMVTLDARFDVEKGKHLLHKFIHNLT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10364

Overview

Ecosystem & Geography

Associated Families

Sequences