NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10378

Scaffold Ga0104988_10378


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10378 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14368
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F019642Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0104988_103783F000645GAGMSNYLDDYVSVQDRLKEFINAFPDYRIKTHVLEESLTSACDVYIVKCELFRTEADAAAWTTGLSSESKSKQYSLELAETGALGRALNLAGYFAKPSGVPKKPIHTTKPELAEFVKEQRPNYPEPVVWDVSVIAEELGAEIVDEIPLCAGGDGPMVLKTGTKEGKEYRGWVCSTPKSGHPARWMRIGSDGKWTFQR*
Ga0104988_103789F019642N/AMAASDLAATIASVLGSIGLLIAGLRYIIKLENIPIVSRLDKMESQLELALSAKVARSGNKKAR*
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