NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104988_10490

Scaffold Ga0104988_10490


Overview

Basic Information
Taxon OID3300007735 Open in IMG/M
Scaffold IDGa0104988_10490 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)16173
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (84.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033399Metagenome / Metatranscriptome177Y
F033775Metagenome / Metatranscriptome176Y
F054805Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0104988_104902F054805AGGCGGMTHERQMLDHLFNRLKEREREVSEAMAEGSAKDFAEYRNLCGVIQGLRRARLEVQDLVQRYEEFEND*
Ga0104988_1049028F033399AGGAGMALTPEMQAQVDFQNATEATRHANQLALEARRAKLEAVRLAKETLIENARSKPVDVRDVSAADIQAFAQTLVSYINE*
Ga0104988_104909F033775GGAGGMAMQTDVKAISLAASGDISAYPTRVRGLVVEPGASAGSVIIKDGGTGGTTLFTINTIAGGQAFNVFIPAEGVRCFISAYATLSNAKVTVFYG*
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