Basic Information | |
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Taxon OID | 3300007735 Open in IMG/M |
Scaffold ID | Ga0104988_10506 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 16598 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (18.18%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000557 | Metagenome / Metatranscriptome | 1026 | N |
F003267 | Metagenome / Metatranscriptome | 496 | N |
F003459 | Metagenome | 485 | N |
F004837 | Metagenome / Metatranscriptome | 421 | Y |
F011581 | Metagenome / Metatranscriptome | 289 | N |
F012449 | Metagenome / Metatranscriptome | 280 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104988_1050611 | F004837 | N/A | MTQAEYLLAQKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYEQADLFAQANQQTVTHAVTNTSSQ* |
Ga0104988_1050612 | F012449 | N/A | LTALAIAEYHVLPQAWYRTWLGRHKPFSCVTCLSFWVAALLALPVFGYILAPVCGLASAGLTVIILQVTNR* |
Ga0104988_1050624 | F003459 | N/A | MNQELVTIPKSDISKADIADIAANLIHRIEEGEVNPIAAHVRLKAVVKALEQVLKATEQTVWDEAEKNGKTFSAFGADIQLKEGALTPDYTHDQVWSDLQASMKGREEQLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFKG* |
Ga0104988_105063 | F000557 | N/A | MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPAASLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREASWFGWFPKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKAQDQ* |
Ga0104988_1050630 | F011581 | AGG | MTYHSTRPAKALTNALERLMIAISAQELEENHVLLCEYRRACELLGYDPVKARWTNVEAVNASGLPNDEPHTVDYYPLLNPEE* |
Ga0104988_105066 | F003267 | N/A | MKLIHYYHIYCGGGGQWQLIMNQHMMALCNYGLIERLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAWEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQMWCRSMIFFNVVAWERCLAELEKVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPSPDKFIITF* |
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