Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10601 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10601 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18962
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (12.12%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

18962

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (12.12%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F003459	Metagenome	485	N
F004837	Metagenome / Metatranscriptome	421	Y
F006105	Metagenome / Metatranscriptome	381	Y
F006621	Metagenome / Metatranscriptome	368	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F011581	Metagenome / Metatranscriptome	289	N
F012449	Metagenome / Metatranscriptome	280	Y
F035287	Metagenome / Metatranscriptome	172	N
F046337	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1060110	F009057	N/A	MATFRKFAFPSQKVADQLLASLQPLDNAVPLGNIDGLVCYDILFQDACPASLNAYIVWPKPCGVHSFLGWDEQYTADYQEFATPNTK*
Ga0104988_1060112	F007748	N/A	VNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQSTAEAQHKELTELRNELVVLRQRIEFGEHNPSP*
Ga0104988_1060115	F011581	AGG	MTYHSARPAKALTNALERLMISISAQELEENHVVLCEYRRACDLLGYDPAKARWTNVEAVNASGLPNDEPHTVDYYPLLNPEE*
Ga0104988_1060119	F003459	N/A	MNQELVTIPKSDISKQDIADIAANLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEQTVWDEAEKNGKTFSAFGADIQLKEGALTPDYTHDQVWSDLQASMKAREELLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFKG*
Ga0104988_106012	F006105	GGA	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTEYTLLKSANLSNYTERYDKFSLAVGSLETGSYRYEVYDTSSTVSAAVAVVETGLAYVQVVSLTFNTFANSIQYTVFGSSDEGVFDQTFDQSFA*
Ga0104988_1060120	F035287	N/A	MTRPAPPKKKKGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNNLEHLIPVKDPYL*
Ga0104988_1060126	F046337	N/A	MPIPMEEVFLALEDGNYAVGWLTKGQITFTNIHGEAWWTHEVTAWMYPNPPKS*
Ga0104988_1060129	F012449	N/A	MEVILTLLVSSLTALAIAEYHVLPQAWYRTWLGRHKPFSCVTCLTFWVAALLTLLTCDWMLAPVYGLASAGLTVVILQVTNR*
Ga0104988_1060130	F004837	N/A	MTQAEYLLAQKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYEQADLFAQANHHTVTHALTNTPSE*
Ga0104988_1060132	F006621	N/A	LANSTKASNDEAQVQARMDSLMMVITTLCDCIGAVDESNSPNAFAVKMKIVDKIDSLIDKIEY*
Ga0104988_106016	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGTLNLTVGVYFSDRVESISPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTTVSLTRFVESRDDRTAGWVATLSFQIPYSHSVCEIPT*
Ga0104988_106017	F001129	N/A	MLGQGGTMQFIDAAVTGANFDFIVVNAAATFTTLTGTGGENLLTAYALSGKSVSAGIVISGRNGGKITAVTPSAGSVIGYTFL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10601

Overview

Ecosystem & Geography

Associated Families

Sequences