Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10649 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10649 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20740
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (36.36%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

20740

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (36.36%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F014486	Metagenome / Metatranscriptome	262	Y
F024058	Metagenome / Metatranscriptome	207	N
F032162	Metagenome / Metatranscriptome	180	N
F056412	Metagenome / Metatranscriptome	137	N
F080893	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1064912	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYANPEDVKKALVKVALHAFVNKINAKGRKGGLLDLATAKAQSIIDEMAQTCFLWGATSSDGYSLGTISAEKPSDYCGAISNGRD*
Ga0104988_1064918	F080893	AGGAG	MNHSINITNRNILEGEKANPQNCAIARAIKGKMKKKITDVSVLPSHVTLRIDKKIFVAKMPKAGANFIKRFDRGQAVNAFELNLKFKKDFALV*
Ga0104988_1064929	F009669	N/A	MLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYITGISKLVAVVSGIIFALTVKDAAVTGGTVAQTNEAKDRTNGENI*
Ga0104988_106493	F014486	N/A	MNIEKLLNENLESFYPWSDNENPPLDTNKSFVQKQKEIDEMFEGWRASM*
Ga0104988_1064930	F014229	GGAG	MNKLQLAAVALLSVFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVATIVEGLTVGTAPTPEQLQKALTDYLPEEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE*
Ga0104988_1064932	F010817	N/A	MGCATVTPNKIQDDKSSYDATTPKQYQKDNGGLISFVGDDALITPQARERYNNLIEMYKIKFKKEKAIQLKQDSGIKPYKDNFGNELFLIDSEHLVYFGVMNSWLKEKVSADNILDKTIDKINN*
Ga0104988_106498	F024058	N/A	MRENMRKNMTASEEAIITNSRNTPTYFGEVYLYEGTLVKVSYRTTAGNAVVTFLEGKDKDKVGTINLANAKLIEKENK*
Ga0104988_106499	F056412	N/A	MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYEHKVEVAHHNSMTINEKQIEEII*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10649

Overview

Ecosystem & Geography

Associated Families

Sequences