Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10721 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10721 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	24706
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (13.95%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

24706

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (13.95%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F002356	Metagenome / Metatranscriptome	567	N
F004837	Metagenome / Metatranscriptome	421	Y
F008996	Metagenome	324	N
F020667	Metagenome	222	Y
F024098	Metagenome	207	Y
F044982	Metagenome	153	N
F046907	Metagenome	150	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1072118	F046907	N/A	MPEDGEPVLITDVEGMQVVAWFQGGNKWHDDMWNSENHTWWAIEVNYWMPIPEIV*
Ga0104988_1072122	F004837	N/A	MTQEEYLLAQKHRHYWEQYQAALFMRLTPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAEANHHTVTHAINNPNP*
Ga0104988_1072132	F008996	N/A	MKLLANIAYHHHPNRVENLTKVIEAIKSYPLQSEIFVDTNDPQAAQELAHLPVTFHAHTSMGHPWELTSKHRNRIAEVYRHFDWVAYFEDDMMLPKEGFVNFTKQFDPMFEDNLYPSFTRIETYPNVEGEFSPDITFNPTPNMWKEWNGKTYVSLPFYINYHAFWMFSTKRLAEVLSRNPQALQVIPNNGLYRESLASLPIWSLELKPMLEMTEQGELADHCKVYHLSNNYRDNSRNIKEIFKR*
Ga0104988_1072134	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQAQ*
Ga0104988_1072136	F044982	GAGG	MEFDVFVGGSGKKLTDFQKQALPDFGVSLADGAIDNKSYALVTKWLEGVIKLAKQNLANSGAIASDSLSASIDFEPITLTDTSFVVAIVANDYWKFVDLGVKGAKSSSRAPNSPFQYRDKRPPIRPIQEWIAFKSIPLEGRDKIAANRSFAINIANKIRREGLRATNFMSNAVTEDMVAVLTENIAEVLGKSISVATVR*
Ga0104988_1072137	F024098	N/A	MLYKVSGSLIAQPNFRYVCDVKNPAGTTTLARLKCDKLPTTNFGFFDVQKVVETLVSPTKPSLTQTGFVDHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGGLYFPADGGFNDAVTQSLATNVRRTVYSDSYGWLCQGVGSGLASPQDIVATLTYYTAGGTLVRTYDVSIGSASGSTIFRFGVGPMNIKSLTSGQCQDGFAGSVNFPTAEGAYYTIIFADAGGNGTVPFTYVIGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL*
Ga0104988_1072138	F020667	N/A	MSVTLIAYPTANFIDDLTAWNNFNTRATADGADAVEAACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPNNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVMQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDSGGFTDILNQGGGWFQAPWWSLGPSIYVKKMVDLIFAEAGFRYSSNFFNSSLFNKLVIPYASGLRPINLSGSNIFAQSTGITTFAEDVDINLPFSKDTPAPFYDNPGYWVASSSIFVAPSVPTRWNIDVTLTVSGAVTPSYFEANMSVRNLTDSTDNAVITNLKGQTGRQFVVRFQNVTIPANTTANIGFIVTYDLFNNNFAIPSGATVQWTCLENPQSLGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDSQDPKLLYIEPWKDFYSSGVVDWTQKSDENAEQVLTNGDPNAYTNVIFKYKDMDDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIEGTLASGTVKALQTGYRLAQYNLINGQTEWAYQYGVSGNTALSVGILRMPFVSHIDNPYAPSVDLAFGQPRLVYYNAVNASGNPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFVATTTPPVANDPSGLFNGPIDPDPTDPGYEPPINPELPSEG*
Ga0104988_1072141	F002356	N/A	MNLKSAIETLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHQVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKAATQQNFNALAQAIQNLKKSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10721

Overview

Ecosystem & Geography

Associated Families

Sequences