Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10750 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10750 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26071
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26071

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F014488	Metagenome	262	Y
F019290	Metagenome	230	Y
F023585	Metagenome	209	Y
F025739	Metagenome / Metatranscriptome	200	Y
F030060	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1075016	F019290	N/A	MEGHTYWGTTNLKVASAVAAFGAKPRPVDPVTRVIKDGQQQVTFWFISDGNGDVAKKEMERTWADMQSDEESPIRYVRAALENRETLLGLVKRAEPIRIIQVGGQTLMVPENASPERKKALLRHI*
Ga0104988_1075026	F025739	AGGAGG	MMNKLLTGVPLEMLKWIPGFIAVSILVGCSTIQPYDIGQTPNQDSISDFIMRWDRLDRAHATPEEYRELYGQTLKALSRSLEETERCRSRLEAQ*
Ga0104988_1075042	F023585	AGGAG	MSVKRLLLVEEFHRVVSKRLKELFKDFDHAKRENYKDIVSHLDYSHRITKELLERAKKYQKRDLETRK*
Ga0104988_1075051	F014488	GGA	MSPINQDPADSILASYTPDIASEIDTMEDVVKERLSKMKGMNPAISLDELAKMAAQVIQDTIQTELSGPLLRTKRDDTLDEALLALATNRSPESLTSIAKKYINPLTGKPYTRAALSARLSELSQRTGLVLRVQRSQRVREIYKERALRIHQRRRQECPKWPKGAWEKGIKKTVGRGKK*
Ga0104988_107506	F030060	N/A	MIKGVITSEAPQIHWEHLNVTGGRVLDLGCAFWTQAEREEGNGTAKYFLSQKPEFYMGVDINQGDITTLSEQYPEGKFICEKADSAFQMDSWITENSITHVKCDIEGDEAHLLQIGNIHNLKEIAIELHYSDAWLNEFMDWFKSIGFECYRHDSVSFCSEISVIYGRLKC*
Ga0104988_107509	F005584	N/A	MITDLWQSVTGLGSSAVSASVTDLAVSSELDVGGDVFRITQSVVVCASMISAPVIGNLCTVSGIERMIAGFSQSTDGLSYTIDMAEITT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10750

Overview

Ecosystem & Geography

Associated Families

Sequences