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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007735 Open in IMG/M |
| Scaffold ID | Ga0104988_10773 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27806 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (67.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001299 | Metagenome / Metatranscriptome | 727 | Y |
| F012328 | Metagenome / Metatranscriptome | 281 | Y |
| F066604 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104988_1077315 | F012328 | AGGA | MQKNTTPTPDPWDQGPAPAAEAVEPAAAKTPKKNKTEWVVTPEVPAAPQAPASMNSAEYDLEGLMSDFPTARELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQQVDGKFIGSENPYIDKGDLVPVDPVLDPPARDRTLPAHSDTQNLFICNVVPHPNFEMRSQDKKVSCMFRKYKNGMISYEVLGPIEPMPFGEKIDKYGRNRPEVIKMIDPRSGEQVAVREDGTLTQQGKRLRAMMQTFKVNKSNQWDVWIDREFVSLNDTVANNPWDLQS* |
| Ga0104988_1077319 | F066604 | N/A | MDNQDKKSPRYKNKAPSRGGARPGAGRPKNSRDAVTVKGLLEALETQTGGRDYEAILVEDFIQARNNNDTQLTLKYHNLILNKVMSSLAKIEVTDSKDAIEAKQAAFAAALAKLVGVEPETK* |
| Ga0104988_107735 | F001299 | N/A | MTTQDQPEFLDNTDPEKNWDYYRQDHGGVVTNHNGIADRLLKNNELYRSMKGDWTRTATNKSGNIITTTGREDGNFYIKREQQNTEEIKQRVKNYRHAAEQGVPDPLAPIGEDGKLTYKWMELPYVISIRISDQYFDGIPWNALKHDRTLKAQFYKVVETEYPEYVCYPGGKLPIPVAVPYPTKKGEQRYFQGR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |