Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10784 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10784 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	28929
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (72.73%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

28929

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (72.73%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000601	Metagenome	996	Y
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F008415	Metagenome / Metatranscriptome	333	N
F027426	Metagenome	194	Y
F031850	Metagenome	181	N
F090367	Metagenome / Metatranscriptome	108	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_107842	F000601	N/A	MIIKKLNIEETIKAYTNENGFSWGINTVMKSLAPGASYDLTSAGNFIIDRWDSSLPQPTSQEIRDEYIRQQTIAECIEYFNNKK*
Ga0104988_1078421	F031850	AGTAG	MNRTMHQDDDDYYNANVKAIVFIERDNSITVKFTGFQDKEHSAIFSSWLMMLLNIENAIINDSQSKSIH*
Ga0104988_1078426	F027426	AGGAGG	MFNREDYTALIVTALIILLGYASMHLLVYLDEYFKLTNY*
Ga0104988_1078429	F008415	AGGAGG	MTSIQQLKEHIIRMNDEKLLNQFDLYNSFNLQDSKEVIYYKIIEYELHRRRLLDHKLMEDAYEGIY*
Ga0104988_1078435	F005175	GGA	MIDQELTVEIVCEMYEEKILVLKKEIDRLNEEVQVLNIELMKERSKNLGKI*
Ga0104988_1078436	F105047	GAGG	MRHINYDKVIVEWLDISSDGCDDAWNTEEQLKDLLPATCTTIGYLYEDNPHFIKTFATFSYNSDDSIDFGDCVCIPKGVVVSIKKLEN*
Ga0104988_1078437	F090367	AGG	MKHKLIEWQEKNNLSNKEAVEQLGLKGTNPTVTFLRWKNCQRIPHPRFMKKITKLTGITPNNFYEAWYETHKL*
Ga0104988_1078442	F004111	AGG	MIDKIKQVNDLCAANGAYINQHGKKTVSAWSKIKYFREVFGTEYGINCMMIEHTDRYVLMKCLIMGYDPERIISTGYSKQYRDKPGYIEIAETFAITRALSFMGLMLQDITSKEEYEELDIPVQPMDIKGTTSANSNRYDVDAVQKILKNINYAPHTAKLDFLWRANKDLLEQVKINDLNTYQSIVNKFDSKRDEITTQNEV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10784

Overview

Ecosystem & Geography

Associated Families

Sequences