Basic Information | |
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Taxon OID | 3300007735 Open in IMG/M |
Scaffold ID | Ga0104988_10785 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 28983 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (13.79%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006181 | Metagenome / Metatranscriptome | 379 | Y |
F053851 | Metagenome | 140 | N |
F073452 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104988_1078537 | F006181 | N/A | MKKNLIHVIYPDEATYSYVATNDMSVEDNLERVFAEWNHGSGMECEMFIKSNKRSLSVNDIVCVNGKYFQCQSVGWNKVTDEYVINLENDVANSPRRSEGAWFALSDVMYSRSPDGAEATLDGIDVF* |
Ga0104988_1078547 | F053851 | N/A | MHNFTLDYTDGLKIDNNFYDPEFAAGKESHYMVKVYFCHKKIKRSLQTHPDQLGITATIEELESTSNKTILTVNDCNLGCWIQPSFSKFFVPYHVDIYYNTELYQSDTLDCKFKLVNFTLHPKDDRELYTWMNVIENFKKQMQCDISIKNDTVASTTEFDHIADVKYKTNDANKQYYLGLHIGRFYQPNSQNPDVNYHPTGLHNKNSLDIINDILYYYTTII* |
Ga0104988_107856 | F073452 | N/A | MRRIVTKDKKGKKKLVNVPSWDEIYVNNQLGQPAYDVSISSNGSGSLAN* |
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