Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10788 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10788 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	29310
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (76.47%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29310

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (76.47%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F004759	Metagenome / Metatranscriptome	424	Y
F033000	Metagenome	178	Y
F047010	Metagenome	150	Y
F061792	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1078810	F033000	AGCAGG	MTLESKNCKACRPKRKPPTKLSAKEIHNKVQTGDMNVLVAKHLREKQAQDERNAQAIAARKRWLKVWKAELADVLAPIKWEIVSARNAWMYAKRKGYVDKATFYHEYMGMLKRAKEYAEYSHALHPRRPASAEWDDYIEPEVFTKIRDMWAALPPIYKQSRTPMLIKYRDEFTQVNKDSKFVPPRSLAYLKGEK*
Ga0104988_1078813	F047010	GGAG	MTKSFNRVAVFAVFNDADNSSASFAVRLMELGIASRAEAKPFAMEWASKKHDNEPIKQGQRGMTFVKRDTNAERAMNRVLEVCYPKADAPKPKTPKATANKVDPVAALFKKWQALSAGEKRRFTTLQLKA*
Ga0104988_1078833	F004759	AGGAG	MDKKDLAQDKKMIKSAVGKHEKNMHPGKPMTKLKKGGPTTDDRMRLGRNLSRAKNQTTG*
Ga0104988_1078848	F000332	GAG	MRWLLLLLLLGLVGAVAKNGCHVREFYGIGYTIHDPTERHREMMAWLDKNAGHCKSTEYVVIWNNLSEWAGAADSTWLRNKVVHGYKDALEREKK*
Ga0104988_1078849	F002933	GAG	MIPPIHKWYPMLGVADYPTKTDALERRTERLEEEYKQALKMKKVKNKIDDLEFELYVKKAEQNQLRLEIFTNRKLDILV*
Ga0104988_107885	F061792	N/A	VAHHRLIEGSNEYGKYFDIKLYQTIMARFYEPKVEDGKRVERRLYMGHSSQTSKQFMYHTLRVDVGANRQRDSDDMYSDESIIMPIYTEHFMKDEGVPFSLDAVFVDGVLDPTRSRHTPHYRLVADTDVRKFKAKVAAHFEPYIMLAQMRMPEFKAECNIDYRLGQKFGGEGYNRAYYMAIQEMWTDPEPRQQDIDVFFEMCQKAYDIIASKRGMQQADFQVGGSWYSRQNGNQNSTVDELAKPIEMTEFRRAILDRIHKYVGSNSMKKPEEVKQFPKHSEYPRSNIHT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10788

Overview

Ecosystem & Geography

Associated Families

Sequences