Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10811 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10811 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	31188
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

31188

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012212	Metagenome / Metatranscriptome	282	Y
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F051705	Metagenome	143	N
F052463	Metagenome	142	N
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1081114	F039985	AGGA	MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGTGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNECDKAAGDFGGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGADEFEPEPAPVRKAAKPAPAPVMDDEEFF*
Ga0104988_1081117	F044360	AGG	MATKKLTDRDVFPSDLFKVFEHSLMVEMETEKMEHERVWGIDRVIDLVDAEFRRKFNAQRERIWEASRARDEERLEKAIRGMIAAYKALTRWATEADIEQMPKIDCMEYRMGDGSLMVIVRNKQMATWYEQFRKEPNPRSVWTLAELEVVMNGPTLKQVREIKAALPGSTMVPVEAQGSSGFEDMENDIDISKPFKGGKMFDTKAAERDKNERRK*
Ga0104988_1081118	F052463	GGAGG	MPGNPKVRADLALLEDIDDELILSMFEDGRSKADICRGLGIGRRALETWIADNDYEPIITRARVEAASHLACETLAIADGMDIDNAQRDVQRIRTRQWLAERWDRKTYGTEKAQAVNISIQGLRMEALRHVEVVEQLSTDRMPKLSTE*
Ga0104988_1081143	F012212	AGG	MDQIVSAESPWPGTETKTVLVCRIPKKEEDKKMGANEFTDKDGRICRWVVVNKK*
Ga0104988_108115	F051705	GAGG	MQITATFQDEEEAIKAIHSEYAWQALREINELLRQNRKHGLPCEDAVFQIQASVNDALAMIYPD*
Ga0104988_108117	F079788	GGAG	MDNDDDEIESWASLVLGLIAWIFFVIGIVAVAVAICMAWGYYTYEPVCGSVVSRFTEECRLP*
Ga0104988_108118	F027776	GGTGG	MMNPLEIEIKKTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGTETAEKRLVAELEILRGELKSLQTELAYAKAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10811

Overview

Ecosystem & Geography

Associated Families

Sequences