Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10823 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10823 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	32140
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (66.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32140

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (66.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F006986	Metagenome	360	Y
F019319	Metagenome	230	N
F020354	Metagenome	224	Y
F040082	Metagenome	162	N
F077020	Metagenome	117	N
F078386	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1082322	F077020	GAGG	MAQTMKWGQAYSVLIDIGEVANGFVLDTDKLDNTTNVLDGTTNFVDATEYVLAVSIKRGRGSQIDNMQVGVCQVQFDDRQSGRLFDPANTASSWYAGTYGLAPRRNFKVFAGTAEMFVGKMTDIDLQYNMPNQSFCSIVAADGLYELARTTLLGFTPSSELTSSRVSTILDRAEVAYSTALRNIETGVATCGTVSYADNDNVLTALQNVAVAEDGRLYANRKNEISFDARIFSTFSTAVANFGGTAGTSIPVQEISVAYGQETLFNRVSIGVDGFGTAQVVSDAASQTQYGVQSFSYDNLPLVSLAAGSALAVNLLARYKDPKFRFDSISTSLNACGSAQFATLTTLDVGDVVSVTKTYSTGLPLSRTDNMYIESISHDITPQDHRIRLGLGQANVITNFILDTSTLDSTAFGLG*
Ga0104988_1082327	F020354	GAG	VLKKLKEELFALGFTLGASAITIMTLSGSVQNWALFFTFVSLGLHLAGVLTKGEKDNGTDSED*
Ga0104988_1082328	F003378	AGGAG	MEPTVKIKQNSTIAKFLDLGQRLLSLFLANALPAITTGAVIGISVSKSAIMAGAMAVIKVVSVLAEASVDGELTTEEIKEAFSGAKKK*
Ga0104988_1082332	F006986	N/A	MSAVFVIWHDAHSGSESWVNIKDLDKDPAIVETVGFILPTADGGKPGHITLFQSRTEDALDHVLHIPHGMIQRIVAIPTPTD*
Ga0104988_1082333	F078386	GGA	MRILTAIMATITAIATSLGIAYAAQAPAPPAWQYSSPQPISADRLEPPAETIVYAHGDCSWVPALALKAGWTSDQIPQLIQIVLRESGCCPNRAGGDMVDKDCNIKGQDGSNHSSDTSLLQINGLNYNPKRNPFAPICLQMKICTQEPLFDPLTNLKAGRLLYDYWEKAAGDGWIPWNICNRTSTCKASTKVRP*
Ga0104988_1082338	F019319	AGGAG	MTKKDIEDAIAFLEKIFVGPGSQDRLFEVINSLKQELSRRNKK*
Ga0104988_1082339	F040082	AGGAGG	MTADPYAMSQEIIELQTRVAELSTALETVTEQRDHAVDSAQSLFKELDSCHTMLMNLRSQMDRLRLHLQQGIEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10823

Overview

Ecosystem & Geography

Associated Families

Sequences